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hahmmr
numbat
scistreer
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hahmmr::acen_hg19 (tbl_df)
hahmmr::acen_hg38 (tbl_df)
hahmmr::bulk_example (tbl_df)
hahmmr::chrom_sizes_hg19 (data.table)
hahmmr::chrom_sizes_hg38 (data.table)
hahmmr::df_allele_example (data.table)
hahmmr::gaps_hg19 (data.table)
hahmmr::gaps_hg38 (data.table)
hahmmr::gene_counts_example (matrix)
hahmmr::gtf_hg19 (data.table)
hahmmr::gtf_hg38 (data.table)
hahmmr::gtf_mm10 (data.table)
hahmmr::pre_likelihood_hmm (list)
hahmmr::ref_hca (matrix)
hahmmr::ref_hca_counts (matrix)
hahmmr::segs_example (data.table)
hahmmr::vcf_meta (character)
numbat::acen_hg19 (tbl_df)
numbat::acen_hg38 (tbl_df)
numbat::annot_ref (data.frame)
numbat::bulk_example (tbl_df)
numbat::chrom_sizes_hg19 (data.table)
numbat::chrom_sizes_hg38 (data.table)
numbat::count_mat_example (dgCMatrix)
numbat::count_mat_ref (dgCMatrix)
numbat::df_allele_example (data.frame)
numbat::gaps_hg19 (data.table)
numbat::gaps_hg38 (data.table)
numbat::gexp_roll_example (data.frame)
numbat::gtf_hg19 (data.table)
numbat::gtf_hg38 (data.table)
numbat::gtf_mm10 (data.table)
numbat::hc_example (hclust)
numbat::joint_post_example (data.table)
numbat::mut_graph_example (igraph)
numbat::phylogeny_example (tbl_graph)
numbat::pre_likelihood_hmm (list)
numbat::ref_hca (matrix)
numbat::ref_hca_counts (matrix)
numbat::segs_example (data.table)
numbat::vcf_meta (character)
scistreer::P_example (matrix)
scistreer::P_small (matrix)
scistreer::gtree_small (tbl_graph)
scistreer::mut_nodes_small (data.frame)
scistreer::tree_small (phylo)
scistreer::tree_upgma (phylo)
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hahmmr