1. hahmmr::acen_hg19
    centromere regions (hg19)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|22 x 3
  2. hahmmr::acen_hg38
    centromere regions (hg38)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|22 x 3
  3. hahmmr::bulk_example
    example pseudobulk dataframe
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|10321 x 58
  4. hahmmr::chrom_sizes_hg19
    chromosome sizes (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|22 x 2
  5. hahmmr::chrom_sizes_hg38
    chromosome sizes (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|22 x 2
  6. hahmmr::df_allele_example
    example allele count dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.table|9957 x 11
  7. hahmmr::gaps_hg19
    genome gap regions (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|28 x 3
  8. hahmmr::gaps_hg38
    genome gap regions (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|30 x 3
  9. hahmmr::gene_counts_example
    example gene expression counts matrix
    csv| json| rda| rds
    matrix|1758 x 1
  10. hahmmr::gtf_hg19
    gene model (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|26841 x 5
  11. hahmmr::gtf_hg38
    gene model (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|26807 x 5
  12. hahmmr::gtf_mm10
    gene model (mm10)
    csv| xlsx| json| ndjson| rda| rds
    data.table|30336 x 5
  13. hahmmr::pre_likelihood_hmm
    HMM object for unit tests
    json| rda| rds
    list
  14. hahmmr::ref_hca
    reference expression magnitudes from HCA
    csv| json| rda| rds
    matrix|24756 x 12
  15. hahmmr::ref_hca_counts
    reference expression counts from HCA
    csv| json| rda| rds
    matrix|24857 x 12
  16. hahmmr::segs_example
    example CNV segments dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.table|27 x 30
  17. hahmmr::vcf_meta
    example VCF header
    json| rda| rds
    character
  18. numbat::acen_hg19
    centromere regions (hg19)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|22 x 3
  19. numbat::acen_hg38
    centromere regions (hg38)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|22 x 3
  20. numbat::annot_ref
    example reference cell annotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 2
  21. numbat::bulk_example
    example pseudobulk dataframe
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3935 x 83
  22. numbat::chrom_sizes_hg19
    chromosome sizes (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|22 x 2
  23. numbat::chrom_sizes_hg38
    chromosome sizes (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|22 x 2
  24. numbat::count_mat_example
    example gene expression count matrix
    rda| rds
    dgCMatrix
  25. numbat::count_mat_ref
    example reference count matrix
    rda| rds
    dgCMatrix
  26. numbat::df_allele_example
    example allele count dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41167 x 11
  27. numbat::gaps_hg19
    genome gap regions (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|28 x 3
  28. numbat::gaps_hg38
    genome gap regions (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|30 x 3
  29. numbat::gexp_roll_example
    example smoothed gene expression dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 2000
  30. numbat::gtf_hg19
    gene model (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|26841 x 5
  31. numbat::gtf_hg38
    gene model (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|26807 x 5
  32. numbat::gtf_mm10
    gene model (mm10)
    csv| xlsx| json| ndjson| rda| rds
    data.table|30336 x 5
  33. numbat::hc_example
    example hclust tree
    rda| rds
    hclust
  34. numbat::joint_post_example
    example joint single-cell cnv posterior dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.table|3806 x 71
  35. numbat::mut_graph_example
    example mutation graph
    rda| rds
    igraph
  36. numbat::phylogeny_example
    example single-cell phylogeny
    rda| rds
    tbl_graph
  37. numbat::pre_likelihood_hmm
    HMM object for unit tests
    json| rda| rds
    list
  38. numbat::ref_hca
    reference expression magnitudes from HCA
    csv| json| rda| rds
    matrix|24756 x 12
  39. numbat::ref_hca_counts
    reference expression counts from HCA
    csv| json| rda| rds
    matrix|24857 x 12
  40. numbat::segs_example
    example CNV segments dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.table|27 x 30
  41. numbat::vcf_meta
    example VCF header
    json| rda| rds
    character
  42. scistreer::P_example
    Example genotype probability matrix
    csv| json| rda| rds
    matrix|1000 x 25
  43. scistreer::P_small
    Smaller example genotype probability matrix
    csv| json| rda| rds
    matrix|100 x 25
  44. scistreer::gtree_small
    Smaller example annotated tree built from P_small
    rda| rds
    tbl_graph
  45. scistreer::mut_nodes_small
    Mutation placements calculated from tree_small and P_small
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 2
  46. scistreer::tree_small
    Smaller example tree built from P_small
    rda| rds
    phylo
  47. scistreer::tree_upgma
    Example tree built using UPGMA from P_small
    rda| rds
    phylo