viterbi_allele {hahmmr} | R Documentation |
Viterbi algorithm for allele HMM
Description
Viterbi algorithm for allele HMM
Usage
viterbi_allele(hmm)
Arguments
hmm |
HMM object; expect variables x (allele depth), d (total depth), logPi (log transition prob matrix), delta (prior for each state), alpha (alpha for each state), beta (beta for each state), states (states), p_s (phase switch probs) |
Value
character vector Decoded states
[Package hahmmr version 1.0.0 Index]