get_trans_probs_s15 {hahmmr} | R Documentation |
Helper function to calculate transition porbabilities for 15-state joint HMM cn/phase are sclars, only p_s is vectorized
Description
Helper function to calculate transition porbabilities for 15-state joint HMM cn/phase are sclars, only p_s is vectorized
Usage
get_trans_probs_s15(t, p_s, w, cn_from, phase_from, cn_to, phase_to)
Arguments
t |
numeric; CNV state transition probability |
p_s |
numeric; phase switch probability |
w |
numeric; relative abundance of states |
cn_from |
character; originating CNV state |
phase_from |
character; originating haplotype phase state |
cn_to |
character; destination CNV state |
phase_to |
character; destination haplotype phase state |
Value
numeric; transition probability
[Package hahmmr version 1.0.0 Index]