get_allele_hmm_s2 {hahmmr} | R Documentation |
Make a 2-state allele HMM - no transitions to netural state
Description
Make a 2-state allele HMM - no transitions to netural state
Usage
get_allele_hmm_s2(pAD, DP, R, p_s, theta, gamma = 20, r = 0.015)
Arguments
pAD |
integer vector Paternal allele counts |
DP |
integer vector Total alelle counts |
p_s |
numeric vector Phase switch probabilities |
theta |
numeric Haplotype imbalance |
gamma |
numeric Overdispersion in the allele-specific expression |
Value
HMM object
[Package hahmmr version 1.0.0 Index]