calc_trans_mat_s7 {hahmmr}R Documentation

Calculate the transition matrix for 7-state joint HMM

Description

Calculate the transition matrix for 7-state joint HMM

Usage

calc_trans_mat_s7(t, p_s, w, states_cn, states_phase)

Arguments

t

numeric; CNV state transition probability

p_s

numeric; phase switch probability

w

numeric; relative abundance of states

states_cn

character; CNV states

states_phase

character; haplotype phase states

Value

array; transition matrix


[Package hahmmr version 1.0.0 Index]