viterbi_joint_mat {hahmmr} | R Documentation |
Generalized viterbi algorithm for joint HMM, can handle multiple sets of observations
Description
Generalized viterbi algorithm for joint HMM, can handle multiple sets of observations
Usage
viterbi_joint_mat(hmm)
Arguments
hmm |
HMM object; expect variables x (allele depth), d (total depth), y (expression count), l (cell total library size), lambda (reference expression rate), mu (global expression mean), sig (global expression standard deviation), logPi (log transition prob matrix), phi (expression fold change for each state), delta (prior for each state), alpha (alpha for each state), beta (beta for each state), states (states), p_s (phase switch probs) |
Value
character vector; decoded states
[Package hahmmr version 1.0.0 Index]