To cite package ‘hahmmr’ in publications use:

Gao T, Biederstedt E, Kharchenko P (2023). hahmmr: Haplotype-Aware Hidden Markov Model for RNA. R package version 1.0.0, https://CRAN.R-project.org/package=hahmmr.

Corresponding BibTeX entry:

  @Manual{,
    title = {hahmmr: Haplotype-Aware Hidden Markov Model for RNA},
    author = {Teng Gao and Evan Biederstedt and Peter Kharchenko},
    year = {2023},
    note = {R package version 1.0.0},
    url = {https://CRAN.R-project.org/package=hahmmr},
  }